Gene Content Evolution in the Arthropods

Guardado en:
Bibliografiske detaljer
Udgivet i:bioRxiv (Oct 16, 2019), p. n/a
Hovedforfatter: Thomas, Gregg W C
Andre forfattere: Dohmen, Elias, Hughes, Daniel S T, Murali, Shwetha C, Poelchau, Monica, Glastad, Karl, Anstead, Clare A, Ayoub, Nadia A, Batterham, Phillip, Bellair, Michelle, Binford, Gretta J, Hsu, Chao, Chen, Yolanda H, Childers, Christopher, Dinh, Huyen, Doddapaneni, Harshavardhan, Duan, Jian J, Dugan, Shannon, Esposito, Lauren A, Friedrich, Markus, Garb, Jessica, Gasser, Robin B B, Goodisman, Michael A D, Gundersen-Rindal, Dawn E, Han, Yi, Handler, Alfred M, Hatakeyama, Masatsugu, Hering, Lars, Hunter, Wayne B, Ioannidis, Panagiotis, Jayaseelan, Joy C, Kalra, Divya, Khila, Abderrahman, Korhonen, Pasi K, Lee, Carol Eunmi, Lee, Sandra L, Li, Yiyuan, Lindsey, Amelia Ri, Mayer, Georg, Mcgregor, Alistair P, Mckenna, Duane D, Misof, Bernhard, Munidasa, Mala, Munoz-Torres, Monica, Muzny, Donna M, Niehuis, Oliver, Osuji-Lacy, Nkechinyere, Palli, Subba R, Panfilio, Kristen A, Pechmann, Matthias, Perry, Trent, Peters, Ralph S, Poynton, Helen C, Nikola-Michael Prpic, Qu, Jiaxin, Rotenberg, Dorith, Schal, Coby, Schoville, Sean D, Scully, Erin D, Skinner, Evette, Sloan, Daniel B, Stouthamer, Richard, Strand, Michael R, Szucsich, Nikolaus U, Wijeratne, Asela, Young, Neil D, Zattara, Eduardo E, Benoit, Joshua B, Zdobnov, Evgeny M, Pfrender, Michael E, Hackett, Kevin J, Werren, John H, Worley, Kim C, Gibbs, Richard A, Chipman, Ariel D, Waterhouse, Robert M, Bornberg-Bauer, Erich, Hahn, Matthew W, Richards, Stephen
Udgivet:
Cold Spring Harbor Laboratory Press
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024 7 |a 10.1101/382945  |2 doi 
035 |a 2082893287 
045 0 |b d20191016 
100 1 |a Thomas, Gregg W C 
245 1 |a Gene Content Evolution in the Arthropods 
260 |b Cold Spring Harbor Laboratory Press  |c Oct 16, 2019 
513 |a Working Paper 
520 3 |a Arthropods comprise the largest and most diverse phylum on Earth and play vital roles in nearly every ecosystem. Their diversity stems in part from variations on a conserved body plan, resulting from and recorded in adaptive changes in the genome. Dissection of the genomic record of sequence change enables broad questions regarding genome evolution to be addressed, even across hyper-diverse taxa within arthropods. Using 76 whole genome sequences representing 21 orders spanning more than 500 million years of arthropod evolution, we document changes in gene and protein domain content and provide temporal and phylogenetic context for interpreting these innovations. We identify many novel gene families that arose early in the evolution of arthropods and during the diversification of insects into modern orders. We reveal unexpected variation in patterns of DNA methylation across arthropods and examples of gene family and protein domain evolution coincident with the appearance of notable phenotypic and physiological adaptations such as flight, metamorphosis, sociality and chemoperception. These analyses demonstrate how large-scale comparative genomics can provide broad new insights into the genotype to phenotype map and generate testable hypotheses about the evolution of animal diversity. Footnotes * https://www.ncbi.nlm.nih.gov/bioproject/?term=PRJNA163973 
653 |a DNA methylation 
653 |a Arthropods 
653 |a Genomes 
653 |a Evolution 
653 |a Genotypes 
653 |a Nucleotide sequence 
653 |a Phylogeny 
653 |a Metamorphosis 
653 |a Gene families 
653 |a Phenotypes 
653 |a Genomics 
653 |a Adaptation 
700 1 |a Dohmen, Elias 
700 1 |a Hughes, Daniel S T 
700 1 |a Murali, Shwetha C 
700 1 |a Poelchau, Monica 
700 1 |a Glastad, Karl 
700 1 |a Anstead, Clare A 
700 1 |a Ayoub, Nadia A 
700 1 |a Batterham, Phillip 
700 1 |a Bellair, Michelle 
700 1 |a Binford, Gretta J 
700 1 |a Hsu, Chao 
700 1 |a Chen, Yolanda H 
700 1 |a Childers, Christopher 
700 1 |a Dinh, Huyen 
700 1 |a Doddapaneni, Harshavardhan 
700 1 |a Duan, Jian J 
700 1 |a Dugan, Shannon 
700 1 |a Esposito, Lauren A 
700 1 |a Friedrich, Markus 
700 1 |a Garb, Jessica 
700 1 |a Gasser, Robin B B 
700 1 |a Goodisman, Michael A D 
700 1 |a Gundersen-Rindal, Dawn E 
700 1 |a Han, Yi 
700 1 |a Handler, Alfred M 
700 1 |a Hatakeyama, Masatsugu 
700 1 |a Hering, Lars 
700 1 |a Hunter, Wayne B 
700 1 |a Ioannidis, Panagiotis 
700 1 |a Jayaseelan, Joy C 
700 1 |a Kalra, Divya 
700 1 |a Khila, Abderrahman 
700 1 |a Korhonen, Pasi K 
700 1 |a Lee, Carol Eunmi 
700 1 |a Lee, Sandra L 
700 1 |a Li, Yiyuan 
700 1 |a Lindsey, Amelia Ri 
700 1 |a Mayer, Georg 
700 1 |a Mcgregor, Alistair P 
700 1 |a Mckenna, Duane D 
700 1 |a Misof, Bernhard 
700 1 |a Munidasa, Mala 
700 1 |a Munoz-Torres, Monica 
700 1 |a Muzny, Donna M 
700 1 |a Niehuis, Oliver 
700 1 |a Osuji-Lacy, Nkechinyere 
700 1 |a Palli, Subba R 
700 1 |a Panfilio, Kristen A 
700 1 |a Pechmann, Matthias 
700 1 |a Perry, Trent 
700 1 |a Peters, Ralph S 
700 1 |a Poynton, Helen C 
700 1 |a Nikola-Michael Prpic 
700 1 |a Qu, Jiaxin 
700 1 |a Rotenberg, Dorith 
700 1 |a Schal, Coby 
700 1 |a Schoville, Sean D 
700 1 |a Scully, Erin D 
700 1 |a Skinner, Evette 
700 1 |a Sloan, Daniel B 
700 1 |a Stouthamer, Richard 
700 1 |a Strand, Michael R 
700 1 |a Szucsich, Nikolaus U 
700 1 |a Wijeratne, Asela 
700 1 |a Young, Neil D 
700 1 |a Zattara, Eduardo E 
700 1 |a Benoit, Joshua B 
700 1 |a Zdobnov, Evgeny M 
700 1 |a Pfrender, Michael E 
700 1 |a Hackett, Kevin J 
700 1 |a Werren, John H 
700 1 |a Worley, Kim C 
700 1 |a Gibbs, Richard A 
700 1 |a Chipman, Ariel D 
700 1 |a Waterhouse, Robert M 
700 1 |a Bornberg-Bauer, Erich 
700 1 |a Hahn, Matthew W 
700 1 |a Richards, Stephen 
773 0 |t bioRxiv  |g (Oct 16, 2019), p. n/a 
786 0 |d ProQuest  |t Biological Science Database 
856 4 1 |3 Citation/Abstract  |u https://www.proquest.com/docview/2082893287/abstract/embedded/7BTGNMKEMPT1V9Z2?source=fedsrch 
856 4 0 |3 Full Text - PDF  |u https://www.proquest.com/docview/2082893287/fulltextPDF/embedded/7BTGNMKEMPT1V9Z2?source=fedsrch