Emergent digital bio-computation through spatial diffusion and engineered bacteria

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Publicat a:Nature Communications vol. 15, no. 1 (2024), p. 4896
Autor principal: Fedorec, Alex J. H.
Altres autors: Treloar, Neythen J., Wen, Ke Yan, Dekker, Linda, Ong, Qing Hsuan, Jurkeviciute, Gabija, Lyu, Enbo, Rutter, Jack W., Zhang, Kathleen J. Y., Rosa, Luca, Zaikin, Alexey, Barnes, Chris P.
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022 |a 2041-1723 
024 7 |a 10.1038/s41467-024-49264-3  |2 doi 
035 |a 3065628403 
045 2 |b d20240101  |b d20241231 
084 |a 145839  |2 nlm 
100 1 |a Fedorec, Alex J. H.  |u University College London, Department of Cell and Developmental Biology, London, UK (GRID:grid.83440.3b) (ISNI:0000 0001 2190 1201) 
245 1 |a Emergent digital bio-computation through spatial diffusion and engineered bacteria 
260 |b Nature Publishing Group  |c 2024 
513 |a Journal Article 
520 3 |a Biological computing is a promising field with potential applications in biosafety, environmental monitoring, and personalized medicine. Here we present work on the design of bacterial computers using spatial patterning to process information in the form of diffusible morphogen-like signals. We demonstrate, mathematically and experimentally, that single, modular, colonies can perform simple digital logic, and that complex functions can be built by combining multiple colonies, removing the need for further genetic engineering. We extend our experimental system to incorporate sender colonies as morphogen sources, demonstrating how one might integrate different biochemical inputs. Our approach will open up ways to perform biological computation, with applications in bioengineering, biomaterials and biosensing. Ultimately, these computational bacterial communities will help us explore information processing in natural biological systems.Biological computing is a promising field with potential applications in biosafety, environmental monitoring, and personalized medicine. Here the authors create bio-computers using engineered E. coli colonies that respond to chemical gradients, producing different logic functions depending on how they are spatially arranged. 
653 |a Mathematics 
653 |a Environmental monitoring 
653 |a Biological computing 
653 |a Data processing 
653 |a Precision medicine 
653 |a Biosensors 
653 |a Bioengineering 
653 |a Genetic engineering 
653 |a Biomaterials 
653 |a Colonies 
653 |a Customization 
653 |a Bacteria 
653 |a Biosafety 
653 |a Biomedical materials 
653 |a Information processing 
653 |a Computers 
653 |a E coli 
653 |a Environmental 
700 1 |a Treloar, Neythen J.  |u University College London, Department of Cell and Developmental Biology, London, UK (GRID:grid.83440.3b) (ISNI:0000 0001 2190 1201) 
700 1 |a Wen, Ke Yan  |u University College London, Department of Cell and Developmental Biology, London, UK (GRID:grid.83440.3b) (ISNI:0000 0001 2190 1201) 
700 1 |a Dekker, Linda  |u University College London, Department of Cell and Developmental Biology, London, UK (GRID:grid.83440.3b) (ISNI:0000 0001 2190 1201) 
700 1 |a Ong, Qing Hsuan  |u University College London, Department of Cell and Developmental Biology, London, UK (GRID:grid.83440.3b) (ISNI:0000 0001 2190 1201) 
700 1 |a Jurkeviciute, Gabija  |u University College London, Department of Cell and Developmental Biology, London, UK (GRID:grid.83440.3b) (ISNI:0000 0001 2190 1201) 
700 1 |a Lyu, Enbo  |u University College London, Department of Cell and Developmental Biology, London, UK (GRID:grid.83440.3b) (ISNI:0000 0001 2190 1201) 
700 1 |a Rutter, Jack W.  |u University College London, Department of Cell and Developmental Biology, London, UK (GRID:grid.83440.3b) (ISNI:0000 0001 2190 1201) 
700 1 |a Zhang, Kathleen J. Y.  |u University College London, Department of Cell and Developmental Biology, London, UK (GRID:grid.83440.3b) (ISNI:0000 0001 2190 1201) 
700 1 |a Rosa, Luca  |u University College London, Department of Cell and Developmental Biology, London, UK (GRID:grid.83440.3b) (ISNI:0000 0001 2190 1201) 
700 1 |a Zaikin, Alexey  |u University College London, Department of Mathematics, London, UK (GRID:grid.83440.3b) (ISNI:0000 0001 2190 1201); University College London, Institute for Women’s Health, London, UK (GRID:grid.83440.3b) (ISNI:0000 0001 2190 1201) 
700 1 |a Barnes, Chris P.  |u University College London, Department of Cell and Developmental Biology, London, UK (GRID:grid.83440.3b) (ISNI:0000 0001 2190 1201) 
773 0 |t Nature Communications  |g vol. 15, no. 1 (2024), p. 4896 
786 0 |d ProQuest  |t Health & Medical Collection 
856 4 1 |3 Citation/Abstract  |u https://www.proquest.com/docview/3065628403/abstract/embedded/L8HZQI7Z43R0LA5T?source=fedsrch 
856 4 0 |3 Full Text - PDF  |u https://www.proquest.com/docview/3065628403/fulltextPDF/embedded/L8HZQI7Z43R0LA5T?source=fedsrch