De novo assembly of transcriptomes of six Hua species (Semisulcospiridae, Cerithioidea, Gastropoda)
Uloženo v:
| Vydáno v: | Scientific Data vol. 12, no. 1 (2025), p. 1126 |
|---|---|
| Hlavní autor: | |
| Další autoři: | , , , , |
| Vydáno: |
Nature Publishing Group
|
| Témata: | |
| On-line přístup: | Citation/Abstract Full Text Full Text - PDF |
| Tagy: |
Žádné tagy, Buďte první, kdo vytvoří štítek k tomuto záznamu!
|
MARC
| LEADER | 00000nab a2200000uu 4500 | ||
|---|---|---|---|
| 001 | 3226588626 | ||
| 003 | UK-CbPIL | ||
| 022 | |a 2052-4463 | ||
| 024 | 7 | |a 10.1038/s41597-025-05425-7 |2 doi | |
| 035 | |a 3226588626 | ||
| 045 | 2 | |b d20250101 |b d20251231 | |
| 084 | |a 274935 |2 nlm | ||
| 100 | 1 | |a Zeng, Sheng |u Xiamen University, College of the Environment and Ecology, Xiamen, China (GRID:grid.12955.3a) (ISNI:0000 0001 2264 7233) | |
| 245 | 1 | |a <i>De novo</i> assembly of transcriptomes of six <i>Hua</i> species (Semisulcospiridae, Cerithioidea, Gastropoda) | |
| 260 | |b Nature Publishing Group |c 2025 | ||
| 513 | |a Journal Article | ||
| 520 | 3 | |a Species in Semisulcospiridae are important in freshwater ecology and have great research value, yet their genomic resources remain very limited. Here, we present de novo assembled transcriptomes from six species of Hua in Semisulcospiridae, including Hua textrix (Heude, 1888), H. yangi L.-N. Du, J.-X. Yang & Chen, 2023, H. wujiangensis L.-N. Du, J.-X. Yang & Chen, 2023, and three undescribed species. Assembly was performed using Trinity, resulting in average contig lengths ranging from 716.6 to 883.3 bp and transcript numbers ranging from 147,147 to 268,741. Benchmarking Universal Single-Copy Ortholog (BUSCO) analysis was used to assess the transcriptome completeness. The functional annotation of transcripts for each species had over 18,000 BLAST hits, 17,000 GO terms, 15,000 KEGG pathways, 8,000 Pfam accessions, and 140 COG functional categories. This study provides valuable transcriptomic resources for the six Hua species, which can be used for various research of Semisulcospiridae, including biodiversity, phylogeny, and comparative genomics. | |
| 651 | 4 | |a China | |
| 651 | 4 | |a Guizhou China | |
| 651 | 4 | |a Yunnan China | |
| 653 | |a Whole genome sequencing | ||
| 653 | |a Physiology | ||
| 653 | |a Transcriptomes | ||
| 653 | |a Species | ||
| 653 | |a Phylogenetics | ||
| 653 | |a Transcriptomics | ||
| 653 | |a Biodiversity | ||
| 653 | |a Genes | ||
| 653 | |a Morphology | ||
| 653 | |a Genomics | ||
| 700 | 1 | |a Meng, Yuanzheng |u Xiamen University, College of the Environment and Ecology, Xiamen, China (GRID:grid.12955.3a) (ISNI:0000 0001 2264 7233) | |
| 700 | 1 | |a Lin, Zeyang |u Xiamen Ocean Vocational College, Xiamen, China (GRID:grid.12955.3a) | |
| 700 | 1 | |a Yang, Deyuan |u Xiamen University, College of the Environment and Ecology, Xiamen, China (GRID:grid.12955.3a) (ISNI:0000 0001 2264 7233) | |
| 700 | 1 | |a Zhang, Yanjie |u Hainan University, School of Life and Health Sciences, Haikou, China (GRID:grid.428986.9) (ISNI:0000 0001 0373 6302) | |
| 700 | 1 | |a Yang, Shengchang |u Xiamen University, College of the Environment and Ecology, Xiamen, China (GRID:grid.12955.3a) (ISNI:0000 0001 2264 7233) | |
| 773 | 0 | |t Scientific Data |g vol. 12, no. 1 (2025), p. 1126 | |
| 786 | 0 | |d ProQuest |t Health & Medical Collection | |
| 856 | 4 | 1 | |3 Citation/Abstract |u https://www.proquest.com/docview/3226588626/abstract/embedded/7BTGNMKEMPT1V9Z2?source=fedsrch |
| 856 | 4 | 0 | |3 Full Text |u https://www.proquest.com/docview/3226588626/fulltext/embedded/7BTGNMKEMPT1V9Z2?source=fedsrch |
| 856 | 4 | 0 | |3 Full Text - PDF |u https://www.proquest.com/docview/3226588626/fulltextPDF/embedded/7BTGNMKEMPT1V9Z2?source=fedsrch |