Organic farming significantly improves microbial community structure, network complexity, and functional diversity in the Gannan navel orange orchard

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Yayımlandı:BMC Microbiology vol. 25 (2025), p. 1-17
Yazar: Liu, Lianlian
Diğer Yazarlar: Muhammad Atif Muneer, Zhong, Yanting, He, Boyi, Li, Xuexian
Baskı/Yayın Bilgisi:
Springer Nature B.V.
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022 |a 1471-2180 
024 7 |a 10.1186/s12866-025-04271-2  |2 doi 
035 |a 3247132797 
045 2 |b d20250101  |b d20251231 
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100 1 |a Liu, Lianlian 
245 1 |a Organic farming significantly improves microbial community structure, network complexity, and functional diversity in the Gannan navel orange orchard 
260 |b Springer Nature B.V.  |c 2025 
513 |a Journal Article 
520 3 |a BackgroundIn recent years, improper agricultural management practices have led to the loss of biodiversity and poor fruit quality in orchards. Converting conventional farming to organic farming is an environmentally responsible approach to improving sustainable fruit production. However, questions remain regarding how the microbial community responds to different farming practices in citrus trees. Specifically, this study aims to investigate how organic and conventional farming affect the microbial community structure and functional diversity in the Gannan navel orange orchard using 16S rRNA gene sequencing and Biolog Eco-Plate analysis.ResultsThe results showed that the soil bacterial diversity (α-diversity index) under organic farming was higher than that under conventional farming. Actinobacteria, Bacteroidetes, and Firmicutes were more abundant in root and fruit compartments under organic farming, indicating that organic farming promotes the enrichment of copiotrophic bacteria (r-strategists). Furthermore, organic farming resulted in a considerable increase in the relative abundance of Burkholderia and Streptomyces in root tissues. Interestingly, organic farming exhibited a more complex bacterial network. Biolog analysis further revealed higher functional diversity of the soil microbial community under organic farming when compared with that under conventional farming.ConclusionsThese findings provide evidence that organic farming improves the bacterial community structure and promotes microbial functional diversity in the citrus orchards, contributing to the overall health and production of the citrus crop. Synthetic microbial communities of the organic citrus orchards hold great promise for more efficient environment-friendly orchard management towards sustainable agriculture. 
651 4 |a China 
653 |a Community structure 
653 |a Soil microorganisms 
653 |a Agricultural production 
653 |a rRNA 16S 
653 |a Agricultural practices 
653 |a Orchards 
653 |a Plant tissues 
653 |a Citrus fruits 
653 |a Fruits 
653 |a Soil bacteria 
653 |a Biological effects 
653 |a Agricultural management 
653 |a Leaves 
653 |a Biodiversity 
653 |a Fruit trees 
653 |a Citrus trees 
653 |a Organic farming 
653 |a Microbiomes 
653 |a Microbial activity 
653 |a Sustainable agriculture 
653 |a Crop production 
653 |a Acidification 
653 |a Microorganisms 
653 |a Farming 
653 |a Biodiversity loss 
653 |a Soil fertility 
653 |a Gene sequencing 
653 |a Carbon 
653 |a Pesticides 
653 |a Oranges 
653 |a Fertilizers 
653 |a Trees 
653 |a Relative abundance 
653 |a Complexity 
653 |a Environmental 
700 1 |a Muhammad Atif Muneer 
700 1 |a Zhong, Yanting 
700 1 |a He, Boyi 
700 1 |a Li, Xuexian 
773 0 |t BMC Microbiology  |g vol. 25 (2025), p. 1-17 
786 0 |d ProQuest  |t Health & Medical Collection 
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856 4 0 |3 Full Text  |u https://www.proquest.com/docview/3247132797/fulltext/embedded/7BTGNMKEMPT1V9Z2?source=fedsrch 
856 4 0 |3 Full Text - PDF  |u https://www.proquest.com/docview/3247132797/fulltextPDF/embedded/7BTGNMKEMPT1V9Z2?source=fedsrch