Graph-based pangenomes and pan-phenome provide a cornerstone for eggplant biology and breeding
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| Wydane w: | Nature Communications vol. 16, no. 1 (2025), p. 9919-9939 |
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| Kolejni autorzy: | , , , , , , , , , , , , , , , , , , , , , , |
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| 022 | |a 2041-1723 | ||
| 024 | 7 | |a 10.1038/s41467-025-64866-1 |2 doi | |
| 035 | |a 3270873032 | ||
| 045 | 2 | |b d20250101 |b d20251231 | |
| 084 | |a 145839 |2 nlm | ||
| 100 | 1 | |a Gaccione, Luciana |u DISAFA, Plant Genetics, University of Turin, Grugliasco, TO, Italy (ROR: https://ror.org/048tbm396) (GRID: grid.7605.4) (ISNI: 0000 0001 2336 6580) | |
| 245 | 1 | |a Graph-based pangenomes and pan-phenome provide a cornerstone for eggplant biology and breeding | |
| 260 | |b Nature Publishing Group |c 2025 | ||
| 513 | |a Journal Article | ||
| 520 | 3 | |a Eggplant (Solanum melongena L.) is a major Solanaceous crop of Asian origin, but genomic resources remain limited compared to related species. Here, a core collection of 368 accessions spanning global diversity of S. melongena and wild relatives is phenotyped for agronomic, disease resistance and fruit metabolomic traits and resequenced. Additionally, 40 chromosome-level assemblies of S. melongena, its progenitor S. insanum and the allied species S. incanum enable the construction of two graph-based pangenomes, capturing broad genetic variation. We demonstrate the power of these datasets by identifying major loci controlling prickliness and resistance to Fusarium oxysporum f. sp. melongenae, driven by SVs affecting the LONELY GUY 3 gene and a resistance gene cluster, respectively, as well as a mutation in a GDSL-like esterase/lipase gene altering the levels of dicaffeoyl-quinic acids. These findings provide a cornerstone for pangenome-assisted breeding, enabling detailed analyses of genetic diversity, domestication history, and trait evolution in eggplant.Eggplants are important vegetables worldwide. Here, the authors report 40 genome assemblies of Solanum melongena, its progenitor S. insanum and the allied species S. incanum to construct two pangenomes, and identify loci associated with multiple traits via pangenome-wide association analysis. | |
| 653 | |a Disease resistance | ||
| 653 | |a Genetic analysis | ||
| 653 | |a Phylogenetics | ||
| 653 | |a Evolution | ||
| 653 | |a Flowers & plants | ||
| 653 | |a Plant breeding | ||
| 653 | |a Domestication | ||
| 653 | |a Biosynthesis | ||
| 653 | |a Metabolomics | ||
| 653 | |a Chromosomes | ||
| 653 | |a Trees | ||
| 653 | |a Assemblies | ||
| 653 | |a Genomes | ||
| 653 | |a Genetic diversity | ||
| 653 | |a Genes | ||
| 653 | |a Association analysis | ||
| 653 | |a Fusarium oxysporum | ||
| 653 | |a Solanum melongena | ||
| 653 | |a Environmental | ||
| 700 | 1 | |a Toppino, Laura |u CREA, Research Centre for Genomics and Bioinformatics, Montanaso Lombardo, LO, Italy (ROR: https://ror.org/0327f2m07) (GRID: grid.423616.4) (ISNI: 0000 0001 2293 6756) | |
| 700 | 1 | |a Bolger, Marie |u IBG-4, CEPLAS, Forschungzentrum Jülich, Jülich, Germany (ROR: https://ror.org/02nv7yv05) (GRID: grid.8385.6) (ISNI: 0000 0001 2297 375X) | |
| 700 | 1 | |a Schmidt, Maximilian |u Plant Breeding Department, Geisenheim University, Geisenheim, Germany | |
| 700 | 1 | |a Tassone, Maria Rosaria |u CREA, Research Centre for Genomics and Bioinformatics, Montanaso Lombardo, LO, Italy (ROR: https://ror.org/0327f2m07) (GRID: grid.423616.4) (ISNI: 0000 0001 2293 6756) | |
| 700 | 1 | |a Sulli, Maria |u ENEA, Casaccia Res Ctr, Roma, Italy (ROR: https://ror.org/02an8es95) (GRID: grid.5196.b) (ISNI: 0000 0000 9864 2490) | |
| 700 | 1 | |a Idahl, Emily |u Faculty for Mathematica and Natural Sciences, Institute for Biological Data Sciences, Heinrich Heine University, Düsseldorf, Germany (ROR: https://ror.org/024z2rq82) (GRID: grid.411327.2) (ISNI: 0000 0001 2176 9917) | |
| 700 | 1 | |a Alonso, David |u Universitat Politècnica de València, Valencia, Spain (ROR: https://ror.org/01460j859) (GRID: grid.157927.f) (ISNI: 0000 0004 1770 5832) | |
| 700 | 1 | |a Aprea, Giuseppe |u ENEA, Casaccia Res Ctr, Roma, Italy (ROR: https://ror.org/02an8es95) (GRID: grid.5196.b) (ISNI: 0000 0000 9864 2490) | |
| 700 | 1 | |a Ferrante, Paola |u ENEA, Casaccia Res Ctr, Roma, Italy (ROR: https://ror.org/02an8es95) (GRID: grid.5196.b) (ISNI: 0000 0000 9864 2490) | |
| 700 | 1 | |a Lefebvre, Véronique |u INRAE, GAFL, Montfavet, France (ROR: https://ror.org/03kk92g72) (GRID: grid.464148.b) (ISNI: 0000 0004 0502 233X) | |
| 700 | 1 | |a Boyaci, Hatice Filiz |u Faculty of Agriculture, University of Recep Tayyip Erdogan, Rize, Türkiye (ROR: https://ror.org/0468j1635) (GRID: grid.412216.2) (ISNI: 0000 0004 0386 4162) | |
| 700 | 1 | |a Schafleitner, Roland |u The World Vegetable Center, Tainan City, Taiwan (ROR: https://ror.org/05dvmy761) (GRID: grid.468369.6) (ISNI: 0000 0000 9108 2742) | |
| 700 | 1 | |a Gattolin, Stefano |u National Research Council of Italy, Institute of Agricultural Biology and Biotechnology (IBBA-CNR), Milan, Italy (ROR: https://ror.org/01ar90c17) (GRID: grid.419488.8) (ISNI: 0000 0004 1756 3037) | |
| 700 | 1 | |a Finkers, Richard |u Plant Breeding, Wageningen University & Research WUR, Wageningen, The Netherlands (ROR: https://ror.org/04qw24q55) (GRID: grid.4818.5) (ISNI: 0000 0001 0791 5666); GenNovation B.V, Wageningen, The Netherlands | |
| 700 | 1 | |a Brouwer, Matthijs |u Plant Breeding, Wageningen University & Research WUR, Wageningen, The Netherlands (ROR: https://ror.org/04qw24q55) (GRID: grid.4818.5) (ISNI: 0000 0001 0791 5666) | |
| 700 | 1 | |a Bovy, Arnaud |u Plant Breeding, Wageningen University & Research WUR, Wageningen, The Netherlands (ROR: https://ror.org/04qw24q55) (GRID: grid.4818.5) (ISNI: 0000 0001 0791 5666) | |
| 700 | 1 | |a Prohens, Jaime |u Universitat Politècnica de València, Valencia, Spain (ROR: https://ror.org/01460j859) (GRID: grid.157927.f) (ISNI: 0000 0004 1770 5832) | |
| 700 | 1 | |a Portis, Ezio |u DISAFA, Plant Genetics, University of Turin, Grugliasco, TO, Italy (ROR: https://ror.org/048tbm396) (GRID: grid.7605.4) (ISNI: 0000 0001 2336 6580) | |
| 700 | 1 | |a Lanteri, Sergio |u DISAFA, Plant Genetics, University of Turin, Grugliasco, TO, Italy (ROR: https://ror.org/048tbm396) (GRID: grid.7605.4) (ISNI: 0000 0001 2336 6580) | |
| 700 | 1 | |a Rotino, Giuseppe Leonardo |u CREA, Research Centre for Genomics and Bioinformatics, Montanaso Lombardo, LO, Italy (ROR: https://ror.org/0327f2m07) (GRID: grid.423616.4) (ISNI: 0000 0001 2293 6756) | |
| 700 | 1 | |a Giuliano, Giovanni |u ENEA, Casaccia Res Ctr, Roma, Italy (ROR: https://ror.org/02an8es95) (GRID: grid.5196.b) (ISNI: 0000 0000 9864 2490); Pandora Research Srls, Rome, Italy | |
| 700 | 1 | |a Usadel, Björn |u IBG-4, CEPLAS, Forschungzentrum Jülich, Jülich, Germany (ROR: https://ror.org/02nv7yv05) (GRID: grid.8385.6) (ISNI: 0000 0001 2297 375X); Faculty for Mathematica and Natural Sciences, Institute for Biological Data Sciences, Heinrich Heine University, Düsseldorf, Germany (ROR: https://ror.org/024z2rq82) (GRID: grid.411327.2) (ISNI: 0000 0001 2176 9917) | |
| 700 | 1 | |a Barchi, Lorenzo |u DISAFA, Plant Genetics, University of Turin, Grugliasco, TO, Italy (ROR: https://ror.org/048tbm396) (GRID: grid.7605.4) (ISNI: 0000 0001 2336 6580) | |
| 773 | 0 | |t Nature Communications |g vol. 16, no. 1 (2025), p. 9919-9939 | |
| 786 | 0 | |d ProQuest |t Health & Medical Collection | |
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