Tube2FEM: a general-purpose highly automated pipeline for flow-related processes in (embedded) tubular objects
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| Publicado en: | Royal Society Open Science vol. 12, no. 8 (2025), p. 1-23 |
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| Otros Autores: | , , , , , , |
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| Acceso en línea: | Citation/Abstract Full Text Full Text - PDF |
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| 001 | 3273072423 | ||
| 003 | UK-CbPIL | ||
| 022 | |a 2054-5703 | ||
| 024 | 7 | |a 10.1098/rsos.242025 |2 doi | |
| 035 | |a 3273072423 | ||
| 045 | 2 | |b d20250101 |b d20251231 | |
| 100 | 1 | |a Sleiman, Hani Cheikh |u Department of Mechanical Engineering | |
| 245 | 1 | |a Tube2FEM: a general-purpose highly automated pipeline for flow-related processes in (embedded) tubular objects | |
| 260 | |b The Royal Society Publishing |c 2025 | ||
| 513 | |a Journal Article | ||
| 520 | 3 | |a This paper presents an open-source pipeline for simulating flow and flow-related processes in (embedded) tubular structures. Addressing a gap in computational fluid dynamics (CFD) and simulation sciences, it facilitates the transition from raw three-dimensional imaging, graph networks or computer aided design (CAD) models of tubular objects to refined, simulation-ready meshes. This transition, traditionally labourintensive, is streamlined through a series of innovative steps that include surface mesh processing, centre-line construction, anisotropic mesh generation and volumetric meshing, leading to finite element method (FEM) simulations. The pipeline leverages a range of open-source software and libraries, notably GIBBON, FEniCS and Paraview, to provide flexibility and broad applicability across different simulation scenarios, ranging from biomedical to industrial applications. We demonstrate the versatility of our approach through five applications, including the mesh generation for soil-root systems, lung airways, microcirculation networks and portal vein networks, each originating from a different data source. Moreover, for several of these cases, we incorporate CFD simulations and strategies for 3D-1D coupling between the embedding domain and the embedded structures. Finally, we outline some future perspectives aimed at enhancing accuracy, reducing computational time and incorporating advanced modelling and boundary condition strategies to further refine the framework's capabilities. | |
| 653 | |a Finite element method | ||
| 653 | |a Tomography | ||
| 653 | |a Software packages | ||
| 653 | |a Hydrodynamics | ||
| 653 | |a Datasets | ||
| 653 | |a Boundary conditions | ||
| 653 | |a Fluid dynamics | ||
| 653 | |a Mathematical models | ||
| 653 | |a Open source software | ||
| 653 | |a Computer applications | ||
| 653 | |a Embedded structures | ||
| 653 | |a Automation | ||
| 653 | |a Visualization | ||
| 653 | |a Linear algebra | ||
| 653 | |a Simulation | ||
| 653 | |a Flow simulation | ||
| 653 | |a Partial differential equations | ||
| 653 | |a Public domain | ||
| 653 | |a Industrial applications | ||
| 653 | |a Computer aided design--CAD | ||
| 653 | |a Portal vein | ||
| 653 | |a Three dimensional imaging | ||
| 653 | |a Networks | ||
| 653 | |a Computational fluid dynamics | ||
| 653 | |a Embedding | ||
| 653 | |a Computer graphics | ||
| 653 | |a Computing time | ||
| 653 | |a Mesh generation | ||
| 653 | |a Environmental | ||
| 700 | 1 | |a Moerman, Kevin M |u Department of Mechanical Engineering, University of Galway, Galway, Ireland | |
| 700 | 1 | |a De Oliveira, Diana C |u Department of Mechanical Engineering | |
| 700 | 1 | |a Jacob, Joseph |u Satsuma Lab, Hawkes Institute, University College London, London, UK | |
| 700 | 1 | |a Mogulkoc, Nesrin |u Department of Respiratory Medicine, Ege University Hospital, Izmir, Turkey | |
| 700 | 1 | |a Davidson, Brian R | |
| 700 | 1 | |a Walker-Samuel, Simon | |
| 700 | 1 | |a Shipleya, Rebecca J | |
| 773 | 0 | |t Royal Society Open Science |g vol. 12, no. 8 (2025), p. 1-23 | |
| 786 | 0 | |d ProQuest |t Science Database | |
| 856 | 4 | 1 | |3 Citation/Abstract |u https://www.proquest.com/docview/3273072423/abstract/embedded/7BTGNMKEMPT1V9Z2?source=fedsrch |
| 856 | 4 | 0 | |3 Full Text |u https://www.proquest.com/docview/3273072423/fulltext/embedded/7BTGNMKEMPT1V9Z2?source=fedsrch |
| 856 | 4 | 0 | |3 Full Text - PDF |u https://www.proquest.com/docview/3273072423/fulltextPDF/embedded/7BTGNMKEMPT1V9Z2?source=fedsrch |