Parallelization of Gillespie algorithm based on binary words

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Bibliographische Detailangaben
Veröffentlicht in:	arXiv.org (Dec 21, 2024), p. n/a
1. Verfasser:	Lacoste, David
Weitere Verfasser:	Castellana, Michele
Veröffentlicht:	Cornell University Library, arXiv.org
Schlagworte:	Parallel processing Algorithms Independent variables
Online-Zugang:	Citation/Abstract Full text outside of ProQuest
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Beschreibung
Abstract:	We present an improvement of the Gillespie Exact Stochastic Simulation Algorithm, which leverages a bitwise representation of variables to perform independent simulations in parallel. We show that the subsequent gain in computational yield is significant, and it may allow to perform simulations of non-well mixed chemical systems. We illustrate this idea with simulations of Frank model, originally introduced to explain the emergence of homochirality in prebiotic systems.
ISSN:	2331-8422
Quelle:	Engineering Database