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Parallelization of Gillespie algorithm based on binary words

Sparad:
I publikationen:arXiv.org (Dec 21, 2024), p. n/a
Huvudupphov: Lacoste, David
Övriga upphov: Castellana, Michele
Utgiven:
Cornell University Library, arXiv.org
Ämnen:
Parallel processing
Algorithms
Independent variables
Länkar:Citation/Abstract
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Abstrakt:We present an improvement of the Gillespie Exact Stochastic Simulation Algorithm, which leverages a bitwise representation of variables to perform independent simulations in parallel. We show that the subsequent gain in computational yield is significant, and it may allow to perform simulations of non-well mixed chemical systems. We illustrate this idea with simulations of Frank model, originally introduced to explain the emergence of homochirality in prebiotic systems.
ISSN:2331-8422
Källa:Engineering Database