Parallelization of Gillespie algorithm based on binary words
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| Yayımlandı: | arXiv.org (Dec 21, 2024), p. n/a |
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Cornell University Library, arXiv.org
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| Online Erişim: | Citation/Abstract Full text outside of ProQuest |
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| Özet: | We present an improvement of the Gillespie Exact Stochastic Simulation Algorithm, which leverages a bitwise representation of variables to perform independent simulations in parallel. We show that the subsequent gain in computational yield is significant, and it may allow to perform simulations of non-well mixed chemical systems. We illustrate this idea with simulations of Frank model, originally introduced to explain the emergence of homochirality in prebiotic systems. |
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| ISSN: | 2331-8422 |
| Kaynak: | Engineering Database |