Parallelization of Gillespie algorithm based on binary words

-д хадгалсан:
Номзүйн дэлгэрэнгүй
-д хэвлэсэн:arXiv.org (Dec 21, 2024), p. n/a
Үндсэн зохиолч: Lacoste, David
Бусад зохиолчид: Castellana, Michele
Хэвлэсэн:
Cornell University Library, arXiv.org
Нөхцлүүд:
Онлайн хандалт:Citation/Abstract
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Тодорхойлолт
Хураангуй:We present an improvement of the Gillespie Exact Stochastic Simulation Algorithm, which leverages a bitwise representation of variables to perform independent simulations in parallel. We show that the subsequent gain in computational yield is significant, and it may allow to perform simulations of non-well mixed chemical systems. We illustrate this idea with simulations of Frank model, originally introduced to explain the emergence of homochirality in prebiotic systems.
ISSN:2331-8422
Эх сурвалж:Engineering Database